こんなエラーが出た。

[!] Pod::Executable pull --no-rebase --no-commit

You have not concluded your merge (MERGE_HEAD exists).

Please, commit your changes before you can merge.

このコマンドを叩いたらなおった。

pod repo remove master
pod setup

めでたしめでたし。

ソース
pod install often complaining about MERGE_HEAD existing · Issue #2024 · CocoaPods/CocoaPods · GitHub

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